Are you using the effect or instrument version of EnergyXT? I've found that with the effect version it needs an empty file in the track it is on in order to trigger the transport to play. This is easy enough to do in Reaper by selecting the track and doing Insert/Empty Event. Drag the edge of the empty event so that it's the length of your song and you should have no more problems.
You could always use the vsti version which (AFAIK) doesn't have this problem.
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