Maybe post an example of exactly what you're trying to do?
AFAICS, Ctrl+D works here in exactly the same way in the inline MIDI editor as in the separate MIDI editor window. For example, if I create an empty, 8-bar MIDI item, hit E to open the inline MIDI editor and then add four semibreves (whole notes) on beats 1, 2, 3 & 4, then select all of them and hit Ctrl+D the cursor moves to bar 5 and duplicates that pattern between bars 5-8 exactly as expected.
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