you might find it helpful to set the quantize on while recording... rt clk the rec button on the track and you'll get the menu for doing this... that should at least get you started with nice clean 1/8's or whatever you set...
then you can make a selection in the ME and do the other Quantize on the selection.
you might also use some 'tricks'... such as temporarily set the channel of notes you don't want to deal with to say, chan 2 and then use the midi filter to only see chan 1 notes... and deal with them. you see?
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