Well... The ".VR1" is certainly not helping! I have no doubt that it's the culprit.
From what I can see, some of these ".VR1" are audio files since they have a corresponding file ending with ".reapeaks". So, my suggestion is to loose that ".VRx" nomenclature (does it mean "version x"?) and don't name directories with suffix. Use "_" or "-" instead.
Directory: song_version_1
Reaper project: song_version_1.RPP
and so on.
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