MIDI can be a gigantic headache, in this way... don't know if this helps but I've found say, setting the track's MIDI input to "Midi Channel 1" (not ALL), but then inside the menu, you can "Map Input To Channel: (something different)... if you set up a set of folder tracks that are on different MIDI channels, all the knobs from your midi controller will control a different plugin, even though the MIDI channel that the knobs are on hasn't changed. Only the Reaper track.... I use stuff in this way sometimes. It's still confusing, but helpful to me. Hope it helps for you!
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