See if the new build solves the problem. The only thing I could find was that commands to Reaper did nothing if Reaper didn't have focus. This seems to be a new problem, not sure why. For now Autorender will bring Reaper into focus a bunch of times, which is kind of annoying if you're trying to use any other programs while you wait. Oh well. Please let me know if you're still having problems rendering.
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Autorender - Now part of the SWS Extension family
Batch render and tag regions while you watch cat videos
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