Just reporting that I found the .config folder (under my Home directory) and that my JSFX now work. Thanks to everyone for helping me get this up and running.
Edit: I should mention that under linux, the reported latency (5.7 ms) is less than half what it was under windows.
What I don't really understand is that in (from memory) /opt/REAPER/Install Data/Effects are copies of the JSFX files, but they don't seem to do anything. Why is that stuff there? Can I delete it?
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