Do you mean that you used the VLC convert/save function rather than rendering the 48k file in Reaper?
My suggestion was to load the audio file from your commercial system into Reaper, then render it in what ever format you use for your pod cast, then remove the commercial file from Reaper, load the file you just rendered into Reaper and see if that plays smoothly.
I seem to recall you said that once you render the file in Reaper for your pod cast, the file plays fine. If I misunderstood that, then I apologize.
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